Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
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Updated
Oct 5, 2024 - Java
Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
Accurate, resource-frugal and deterministic DNA sequence classifier.
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
A selection of databases for Genestrip
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
TAXnomic Profile Aggregation and STAndardisation
Contains all the code and data related to the CS6024 - Algorithmic Approaches to Computational Biology in the topic: Disease detection using metagenomic dataset
subset and spaced seed design tool
Accurate taxonomic classification and abundance profiling using locality-sensitive hashing.
The impact of transitive annotation on the training of taxonomic classifiers
The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
XGBoost implementation for bacteria family identification
discover-virome: identify and quantify viruses from metagenomic assemblies
🐴 CLinically Okay Metagenomic Pipeline 🐴
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