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Adibvafa/README.md

🌸 Hello, I'm Adib! 🍁

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πŸ€– Machine Learning Engineer Β  | Β  🧠 Neuroscientist Β  | Β  🌐 Community Builder

Machine Learning at Vector Institute and University Health Network, Computer Science and Neuroscience student at the University of Toronto, ambitious to push the boundaries of developing Artificial Intelligence and understanding Biological Intelligence.



πŸš€ Featured Research

EHRMamba Logo

EHRMamba

Website GitHub Paper

NeurIPS ML4H 2024 (U/R)
Vector Institute, University of Toronto

Developed a state-of-the-art foundation model for Electronic Health Records, and Odyssey, the largest open-source library for full-stack EHR modeling.

CodonTransformer Logo

CodonTransformer

Website GitHub Paper

Nature Communications (U/R)
INSERM (France), University of Toronto

Engineered a state-of-the-art model to optimize DNA sequences for protein expreesion in 164 organisms, and released the largest toolkit for codon optimization.


πŸ’Ό Experience

🩺 Healthcare AI

  • Vector Institute: Developing multimodal EHR foundation models (Jan 2024 - Present)
  • University Health Network (WangLab): Building multimodal medical agent for chest X-ray (Sep 2024 - Present)
  • Broad Institute of MIT and Harvard: Researching safety and privacy of healthcare models (Aug 2024 - Present)
  • Mayo Clinic: Detecting cancer using contrastive learning of pathology and radiology images (Jul 2024 - Present)
  • BorealisAI: Generating radiology reports with medical LLMs (Mar 2024 - Aug 2024)

🧬 Computational Biology & Neuroscience

  • INSERM, France: Optimizing DNA sequences for protein expression (Jul 2023 - Sep 2024)
  • iGEM Toronto: Generating novel plasmids with antimicrobial properties (Mar 2024 - Present)
  • UofT Machine Intelligence Team: Predicting protein function, won 2nd prize in CUCAI 2024 (Aug 2023 - Jul 2024)
  • UofT Filion & Koyama Lab: Translating zebrafish brain activity to body movements (May 2023 - Present)

πŸš€ Leadership & Initiatives

  • GenAI Genesis: Organizing Canada's largest AI hackathon as Founder & Co-Chair (Sep 2023 - Present)
  • Google Developer Student Club: Leading GDSC @ UTSC (Aug 2023 - Present)
  • International Biology Olympiad: Silver Medalist (2021)

πŸ›  Tech Stack

Python PyTorch TensorFlow Keras Scikit-Learn Pandas Numpy JAX Hugging Face OpenCV GCP AWS Azure Docker Git Linux Bash C++ Java SQL CUDA


πŸ“Š GitHub Stats

Adib's GitHub stats Β  Β  Top Languages

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  1. CodonTransformer CodonTransformer Public

    CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

    Python 88 3

  2. VectorInstitute/cyclops VectorInstitute/cyclops Public

    Toolkit for evaluating and monitoring AI models in clinical settings

    Python 73 11

  3. VectorInstitute/odyssey VectorInstitute/odyssey Public

    A toolkit for developing foundation models using Electronic Health Record (EHR) data.

    Python 16 5

  4. RadioCareBorealisAI RadioCareBorealisAI Public

    RadioCare: Fighting Inefficiencies in Medical Imaging

    Jupyter Notebook 3 1

  5. UnsearchableTO UnsearchableTO Public

    Forked from whyismynamerudy/UnsearchableTO

    Search anything in Toronto. (32,000+ View on X!)

    TypeScript 3

  6. huggingface/transformers huggingface/transformers Public

    πŸ€— Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

    Python 133k 26.5k