Analysis of scRNA-seq data from HD/WT and Young/Aged Chimeric Striata

Link to Paper: Young glial progenitor cells competitively replace aged and diseased human glia in the adult chimeric mouse brain

Script Markdown Files:

Initial scRNA-Seq Processing
scRNA-seq capture integration
Differential Expression of hGPCs between conditions
IPA Processing
HD Allograft Figure Analysis
WT Isograft Figure Analysis
Supplemental Figure Construction
pySCENIC Prep
Output pySCENIC modules
Run AUCell for pySCENIC
Denoise data for WGCNA
Run WGCNA
Identification of important factors in competition
HD IPA Network Construction
Make Network Tables