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@DIAGNijmegen

Diagnostic Image Analysis Group

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  1. neural-odes-segmentation neural-odes-segmentation Public

    Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands

    Python 105 28

  2. StreamingCNN StreamingCNN Public

    To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …

    Jupyter Notebook 97 21

  3. pathology-whole-slide-data pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 92 27

  4. pathology-streaming-pipeline pathology-streaming-pipeline Public

    Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

    Python 75 10

  5. pathology-hooknet pathology-hooknet Public

    Jupyter Notebook 52 10

  6. pathology-he-auto-augment pathology-he-auto-augment Public

    H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.

    Python 52 7

Repositories

Showing 10 of 152 repositories
  • dragon_baseline Public

    Baseline training algorithm for the DRAGON challenge (dragon.grand-challenge.org)

    DIAGNijmegen/dragon_baseline’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 5, 2024
  • picai_eval Public

    Evaluation of 3D detection and diagnosis performance —geared towards prostate cancer detection in MRI.

    DIAGNijmegen/picai_eval’s past year of commit activity
    Python 19 Apache-2.0 9 0 0 Updated Oct 4, 2024
  • website-content Public

    This repository stores all the content for the diag websites.

    DIAGNijmegen/website-content’s past year of commit activity
  • dragon_prep Public

    Preprocessing scripts for the DRAGON benchmark

    DIAGNijmegen/dragon_prep’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 3, 2024
  • Literature Public

    The literature generated and cited by the group

    DIAGNijmegen/Literature’s past year of commit activity
    TeX 0 2 0 0 Updated Oct 3, 2024
  • pathology-tiger-algorithm-example Public

    Example algorithm and docker for the TIGER challenge

    DIAGNijmegen/pathology-tiger-algorithm-example’s past year of commit activity
    Python 8 MIT 6 1 0 Updated Oct 2, 2024
  • bodyct-sybil-lung-cancer-risk Public Forked from reginabarzilaygroup/Sybil

    Fork of the original Sybil repo, with adjustments by Fennie van der Graaf

    DIAGNijmegen/bodyct-sybil-lung-cancer-risk’s past year of commit activity
    Python 0 MIT 40 0 0 Updated Oct 2, 2024
  • rse-pyswot Public

    Python implementation of JetBrains/swot

    DIAGNijmegen/rse-pyswot’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Oct 1, 2024
  • rse-cirrus-benchmark-suite Public

    A small playwright-based CIRRUS benchmark suite, meant to detect speedups or slowdowns.

    DIAGNijmegen/rse-cirrus-benchmark-suite’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Sep 30, 2024
  • DIAGNijmegen/LEOPARD-challenge-baseline’s past year of commit activity
    Python 1 0 0 0 Updated Sep 26, 2024

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