Create cython backend

.github/workflows/main.yml

@@ -46,11 +46,11 @@ jobs:
 
       - name: pylint check
         run: |
-          python -m pylint src/gstools/
+          python -m pylint src/gstools_cython/
 
       - name: cython-lint check
         run: |
-          cython-lint src/gstools/
+          cython-lint src/gstools_cython/
 
   build_wheels:
     name: wheels for ${{ matrix.os }}
@@ -76,27 +76,27 @@ jobs:
           path: ./dist/*.whl
 
   build_sdist:
-    name: sdist on ${{ matrix.os }} with py ${{ matrix.ver.py }} numpy${{ matrix.ver.np }} scipy${{ matrix.ver.sp }}
+    name: sdist on ${{ matrix.os }} with py ${{ matrix.ver.py }} numpy${{ matrix.ver.np }}
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, windows-latest, macos-13, macos-14]
         # https://github.com/scipy/oldest-supported-numpy/blob/main/setup.cfg
         ver:
-          - {py: '3.8', np: '==1.20.0', sp: '==1.5.4'}
-          - {py: '3.9', np: '==1.20.0', sp: '==1.5.4'}
-          - {py: '3.10', np: '==1.21.6', sp: '==1.7.2'}
-          - {py: '3.11', np: '==1.23.2', sp: '==1.9.2'}
-          - {py: '3.12', np: '==1.26.2', sp: '==1.11.2'}
-          - {py: '3.12', np: '>=2.0.0rc1', sp: '>=1.13.0'}
+          - {py: '3.8', np: '==1.20.0'}
+          - {py: '3.9', np: '==1.20.0'}
+          - {py: '3.10', np: '==1.21.6'}
+          - {py: '3.11', np: '==1.23.2'}
+          - {py: '3.12', np: '==1.26.2'}
+          - {py: '3.12', np: '>=2.0.0rc1'}
         exclude:
           - os: macos-14
-            ver: {py: '3.8', np: '==1.20.0', sp: '==1.5.4'}
+            ver: {py: '3.8', np: '==1.20.0'}
           - os: macos-14
-            ver: {py: '3.9', np: '==1.20.0', sp: '==1.5.4'}
+            ver: {py: '3.9', np: '==1.20.0'}
           - os: macos-14
-            ver: {py: '3.10', np: '==1.21.6', sp: '==1.7.2'}
+            ver: {py: '3.10', np: '==1.21.6'}
     steps:
       - uses: actions/checkout@v4
         with:
@@ -110,21 +110,18 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install build "coveralls>=3.0.0"
+          pip install build
 
-      - name: Install GSTools
+      - name: Install GSTools-Cython
         env:
           GSTOOLS_BUILD_PARALLEL: 1
         run: |
           pip install -v --editable .[test]
 
       - name: Run tests
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         run: |
-          pip install "numpy${{ matrix.ver.np }}" "scipy${{ matrix.ver.sp }}"
-          python -m pytest --cov gstools --cov-report term-missing -v tests/
-          python -m coveralls --service=github
+          pip install "numpy${{ matrix.ver.np }}"
+          python -m pytest -v tests/
 
       - name: Build sdist
         run: |
@@ -136,6 +133,39 @@ jobs:
         with:
           path: dist/*.tar.gz
 
+  coverage:
+    name: coverage
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: '0'
+
+      - name: Set up Python 3.9
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.9
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install "coveralls>=3.0.0"
+
+      - name: Install GSTools-Cython
+        env:
+          GSTOOLS_CY_COV: 1
+        run: |
+          pip install -v --editable .[test]
+
+      - name: Run tests
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          pip install "numpy${{ matrix.ver.np }}"
+          python -m pytest --cov gstools_cython --cov-report term-missing -v tests/
+          python -m coveralls --service=github
+
   upload_to_pypi:
     needs: [build_wheels, build_sdist]
     runs-on: ubuntu-latest

.gitignore

@@ -112,7 +112,7 @@ info/
 *.cpp
 
 # generated version file
-src/gstools/_version.py
+src/gstools_cython/_version.py
 
 # generated docs
 docs/source/examples/

.zenodo.json

@@ -1,10 +1,6 @@
 {
-    "license": "LGPL-3.0+",
+    "license": "LGPL-3.0-or-later",
     "contributors": [
-        {
-            "type": "Other",
-            "name": "Bane Sullivan"
-        },
         {
             "orcid": "0000-0002-2547-8102",
             "affiliation": "Helmholtz Centre for Environmental Research - UFZ",

MANIFEST.in

@@ -1,4 +1,4 @@
 prune **
 recursive-include tests *.py
-recursive-include src/gstools *.py *.pyx
+recursive-include src/gstools_cython *.py *.pyx
 include AUTHORS.md LICENSE README.md pyproject.toml setup.py