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Arioc v1.52

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@RWilton RWilton released this 08 Jun 15:29
· 5 commits to master since this release
v1.52
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Notes for Arioc v1.52:

The current build is v1.52.3144 (21 September 2024).

This is an interim release to address problems that have been identified and fixed since the release of v1.51.

Arioc v1.52 reference-genome lookup tables are incompatible with those generated by AriocE in release v1.43 and earlier. If you are upgrading to v1.52 from an earlier version of Arioc, please re-execute AriocE to create new lookup tables. Updated, pre-encoded lookup tables for the human, mouse, and bread yeast reference genomes are also available at ftp://ftp.ccb.jhu.edu/pub/data/Arioc, the FTP server for the Center for Computational Biology at Johns Hopkins University.

Bug fixes

  • AriocE, AriocU, AriocP: fail with spurious error messages when a short reference sequence contains no nongapped seeds (see #33)
  • AriocE: out-of-order @PG in SAM output
  • AriocE: buffer size validation error when an aggregate FASTA file contains a very short reference sequence (see #35)
  • AriocU, AriocP: error message despite valid alignment score function when read length is only a few bases longer than seed width (see #36)
  • AriocU, AriocP: seed iteration error with read length < (1.5 * seed width)

Downloads

file content
Arioc.RQA.152.zip Linux examples
Arioc.w.152.zip Windows source code
Arioc.x.152.zip Linux source code
AriocSetup.msi Windows binaries and examples
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