chore: update citation #146
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| name: Tests | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| Linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Lint workflow | |
| uses: snakemake/snakemake-github-action@v1.24.0 | |
| with: | |
| directory: .test | |
| snakefile: workflow/Snakefile | |
| args: "--configfile .test/config_ecoli/config.yaml --lint" | |
| Testing: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - Linting | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Test workflow | |
| uses: snakemake/snakemake-github-action@v1 | |
| with: | |
| directory: .test | |
| snakefile: workflow/Snakefile | |
| args: "--configfile .test/config_ecoli/config.yaml --use-conda --show-failed-logs -j 10 --conda-cleanup-pkgs cache --conda-frontend conda" | |
| stagein: "conda config --set channel_priority flexible" |