Merge pull request #19 from complextissue/dev

Require minimum length of 1 for RSEM data
complextissue · Oct 2, 2024 · 023d1cc · 023d1cc
2 parents 097edae + 658610f
commit 023d1cc
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/pytximport/importers/_read_rsem.py b/pytximport/importers/_read_rsem.py
@@ -63,4 +63,7 @@ def read_rsem(
         abundance_column=abundance_column,
     )
 
+    # Set the minimum length to 1
+    transcript_data["length"] = transcript_data["length"].clip(min=1)  # type: ignore
+
     return transcript_data