split out genes and conditions

schema/conditions-source.yaml

@@ -0,0 +1,66 @@
+$schema: http://json-schema.org/draft/2020-12/schema
+title: GKS Common Library Conditions Definitions
+strict: true
+
+imports:
+  core: core-source.yaml
+
+$defs:
+  Condition:
+    inherits: core:DomainEntity
+    description: >-
+      A disease or other medical disorder.
+    oneOf:
+      - $ref: "#/$defs/TraitSet"
+      - $ref: "#/$defs/Disease"
+      - $ref: "#/$defs/Phenotype"
+
+  TraitSet:
+    type: object
+    maturity: draft
+    description: >-
+      A set of phenotype and/or disease concepts that together constitute a condition.
+    inherits: Condition
+    properties:
+      type:
+        extends: type
+        const: TraitSet
+        default: TraitSet
+        description: MUST be "TraitSet".
+      traits:
+        type: array
+        ordered: false
+        items:
+          anyOf:
+            - $ref: "#/$defs/Disease"
+            - $ref: "#/$defs/Phenotype"
+        minItems: 2
+    required:
+      - traits
+
+  Disease:
+    type: object
+    maturity: draft
+    inherits: Condition
+    description: >-
+      A particular abnormal condition that negatively affects the structure or function 
+      of all or part of an organism and is not immediately due to any external injury.
+    properties:
+      type:
+        extends: type
+        const: Disease
+        default: Disease
+        description: MUST be "Disease".
+
+  Phenotype:
+    type: object
+    maturity: draft
+    inherits: Condition
+    description: >-
+      An observable characteristic or trait of an organism.
+    properties:
+      type:
+        extends: type
+        const: Phenotype
+        default: Phenotype
+        description: MUST be "Phenotype".

schema/core-source.yaml

@@ -138,75 +138,3 @@ $defs:
           type: string
     heritableRequired:
       - type
-
-  Condition:
-    inherits: DomainEntity
-    description: >-
-      A disease or other medical disorder.
-    oneOf:
-      - $ref: "#/$defs/TraitSet"
-      - $ref: "#/$defs/Disease"
-      - $ref: "#/$defs/Phenotype"
-
-  TraitSet:
-    type: object
-    maturity: draft
-    description: >-
-      A set of phenotype and/or disease concepts that together constitute a condition.
-    inherits: Condition
-    properties:
-      type:
-        extends: type
-        const: TraitSet
-        default: TraitSet
-        description: MUST be "TraitSet".
-      traits:
-        type: array
-        ordered: false
-        items:
-          anyOf:
-            - $ref: "#/$defs/Disease"
-            - $ref: "#/$defs/Phenotype"
-        minItems: 2
-    required:
-      - traits
-
-  Disease:
-    type: object
-    maturity: draft
-    inherits: Condition
-    description: >-
-      A particular abnormal condition that negatively affects the structure or function 
-      of all or part of an organism and is not immediately due to any external injury.
-    properties:
-      type:
-        extends: type
-        const: Disease
-        default: Disease
-        description: MUST be "Disease".
-
-  Phenotype:
-    type: object
-    maturity: draft
-    inherits: Condition
-    description: >-
-      An observable characteristic or trait of an organism.
-    properties:
-      type:
-        extends: type
-        const: Phenotype
-        default: Phenotype
-        description: MUST be "Phenotype".
-
-  Gene:
-    inherits: DomainEntity
-    maturity: draft
-    description: >-
-      A basic physical and functional unit of heredity.
-    type: object
-    properties:
-      type:
-        type: string
-        const: "Gene"
-        default: "Gene"
-        description: MUST be "Gene"

schema/def/Disease.rst

@@ -4,7 +4,7 @@ A particular abnormal condition that negatively affects the structure or functio
 
     **Information Model**
 
-Some Disease attributes are inherited from :ref:`DomainEntity`.
+Some Disease attributes are inherited from :ref:`core:DomainEntity`.
 
     .. list-table::
        :class: clean-wrap
@@ -29,11 +29,11 @@ Some Disease attributes are inherited from :ref:`DomainEntity`.
           - 0..1
           - A free-text description of the entity.
        *  - extensions
-          - :ref:`Extension`
+          - `Extension <core.json#/$defs/Extension>`_
           - 0..m
           - 
        *  - mappings
-          - :ref:`Mapping`
+          - `Mapping <core.json#/$defs/Mapping>`_
           - 0..m
           - 
        *  - aliases

schema/def/Gene.rst

@@ -4,7 +4,7 @@ A basic physical and functional unit of heredity.
 
     **Information Model**
 
-Some Gene attributes are inherited from :ref:`DomainEntity`.
+Some Gene attributes are inherited from :ref:`core:DomainEntity`.
 
     .. list-table::
        :class: clean-wrap
@@ -29,11 +29,11 @@ Some Gene attributes are inherited from :ref:`DomainEntity`.
           - 0..1
           - A free-text description of the entity.
        *  - extensions
-          - :ref:`Extension`
+          - `Extension <core.json#/$defs/Extension>`_
           - 0..m
           - 
        *  - mappings
-          - :ref:`Mapping`
+          - `Mapping <core.json#/$defs/Mapping>`_
           - 0..m
           - 
        *  - type

schema/def/Phenotype.rst

@@ -4,7 +4,7 @@ An observable characteristic or trait of an organism.
 
     **Information Model**
 
-Some Phenotype attributes are inherited from :ref:`DomainEntity`.
+Some Phenotype attributes are inherited from :ref:`core:DomainEntity`.
 
     .. list-table::
        :class: clean-wrap
@@ -29,11 +29,11 @@ Some Phenotype attributes are inherited from :ref:`DomainEntity`.
           - 0..1
           - A free-text description of the entity.
        *  - extensions
-          - :ref:`Extension`
+          - `Extension <core.json#/$defs/Extension>`_
           - 0..m
           - 
        *  - mappings
-          - :ref:`Mapping`
+          - `Mapping <core.json#/$defs/Mapping>`_
           - 0..m
           - 
        *  - aliases

schema/def/TraitSet.rst

@@ -4,7 +4,7 @@ A set of phenotype and/or disease concepts that together constitute a condition.
 
     **Information Model**
 
-Some TraitSet attributes are inherited from :ref:`DomainEntity`.
+Some TraitSet attributes are inherited from :ref:`core:DomainEntity`.
 
     .. list-table::
        :class: clean-wrap
@@ -29,11 +29,11 @@ Some TraitSet attributes are inherited from :ref:`DomainEntity`.
           - 0..1
           - A free-text description of the entity.
        *  - extensions
-          - :ref:`Extension`
+          - `Extension <core.json#/$defs/Extension>`_
           - 0..m
           - 
        *  - mappings
-          - :ref:`Mapping`
+          - `Mapping <core.json#/$defs/Mapping>`_
           - 0..m
           - 
        *  - aliases

schema/genes-source.yaml

@@ -0,0 +1,20 @@
+$schema: http://json-schema.org/draft/2020-12/schema
+title: GKS Common Library Gene Definition
+strict: true
+
+imports:
+  core: core-source.yaml
+
+$defs:
+  Gene:
+    inherits: core:DomainEntity
+    maturity: draft
+    description: >-
+      A basic physical and functional unit of heredity.
+    type: object
+    properties:
+      type:
+        type: string
+        const: "Gene"
+        default: "Gene"
+        description: MUST be "Gene"

schema/therapeutics-source.yaml

@@ -1,5 +1,5 @@
 $schema: http://json-schema.org/draft/2020-12/schema
-title: GKS Common Library Core Definitions
+title: GKS Common Library Therapeutics Definitions
 strict: true
 
 imports: